Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12137317 | chr1:26940681 | C/T | 1.99E-8 | 490 | 23.17 | 16.38 | 15.68 | KM Plot |
| THCA | rs12138348 | chr1:45939136 | C/T | 8.92E-7 | 484 | 16.38 | 12.63 | 17.7 | KM Plot |
| THCA | rs12139011 | chr1:48809513 | A/T | 7.66E-5 | 490 | 17.68 | 14.78 | 14.78 | KM Plot |
| THCA | rs12139641 | chr1:156885767 | A/G | 1.22E-6 | 482 | 16.63 | 14.8 | 11.98 | KM Plot |
| THCA | rs12140587 | chr1:48768448 | G/A | 0.000296 | 488 | 17.83 | 14.78 | 14.9 | KM Plot |
| THCA | rs12142842 | chr1:224375695 | T/C | 9.11E-5 | 490 | 16.8 | 14.27 | 13.8 | KM Plot |
| THCA | rs12143045 | chr1:156963724 | T/C | 2.63E-6 | 489 | 16.63 | 15.3 | 12.67 | KM Plot |
| THCA | rs12143450 | chr1:224386534 | G/A | 5.34E-5 | 484 | 16.65 | 14.47 | 13.97 | KM Plot |
| THCA | rs12143768 | chr1:156891610 | G/A | 7.03E-7 | 480 | 16.63 | 14.93 | 11.3 | KM Plot |
| THCA | rs12144602 | chr1:48768793 | T/C | 0.000296 | 488 | 17.83 | 14.78 | 14.9 | KM Plot |
| THCA | rs12145526 | chr1:45969036 | G/C | 4.82E-5 | 490 | 10.6 | 16.07 | 16.97 | KM Plot |
| THCA | rs12147703 | chr14:90849104 | A/G | 4.62E-9 | 490 | 16.13 | 15.3 | 14.8 | KM Plot |
| THCA | rs12164885 | chr14:36039043 | C/T | 5.21E-6 | 487 | 16.08 | 16.37 | 8.33 | KM Plot |
| THCA | rs12189965 | chr6:153308312 | G/T | 4.93E-5 | 482 | 15.13 | 17.93 | 10.45 | KM Plot |
| THCA | rs12190637 | chr6:86297719 | A/G | 2.0E-8 | 473 | 14.97 | 18.3 | 17.12 | KM Plot |